TODO

Client

• Separate cli main function in smaller functions

• Check utils functions absolute_path and remove_duplicates (Might delete).

• Add spinger function

• add scopus function to the others db functions

• add db_stats, as well as any df stat

• add bar plot

Mass Spectrometry

• Make script to plot MS2

• See the possibillity of adding peaks that have difference lower than given resolution

Documentation

• Correct not found class error, from docstrings, like pd.DataFrame and matplotlib types

• Add plots/nbs to the documentation

• Add springer function

Notebooks

Data analysis

• Check if kwargs type values are correct by testing

• Create an conditional if queryied articles in a month is more than 9999, to split the month and than add the results.

• Check statistic function and find_matching_postions. (Might delete them)

• Probably remove read_pubmed_csv function (deprecated, use clean_csv instead)

• Remove my springer api from the code, try to use as an environment variable